Will having a credit card payment refunded, after it is late, and then resend before 30 days late hurt credit?

I forgot to send in my credit card payment on time and sent it electronically 12 days late. The next day my bank account was empty because I put a decimal in the wrong place and paid $2,500 instead of $250. Credit card is refunding so I can resubmit my payment and they'll still receive it before I am 30 days late. Will this really hurt my credit score?